High-resolution monitoring of water quality and ecosystem functioning over large spatial scales in expansive lowland river catchments is challenging. Therefore, we need modeling tools to predict these processes at locations where observations are absent. Here, we present a new approach to estimate ecosystem metabolism underpinned by a high-resolution, process-based model of in-stream flows and water quality. The model overcomes the current challenges in metabolism modeling by accounting for oxygen transport under varying flows and oxygen transformations due to biogeochemical processes. We implement the model in a 62-km-long stretch of the River Thames, England, using observations spanning 2 yr. Model outputs suggest that the river is primarily autotrophic from mid-spring to mid-summer due to high biomass during low-flow periods, and is heterotrophic during the rest of the year. Ecosystem respiration in upstream reaches is driven mainly by biochemical oxygen demand, autotrophic respiration, and nitrification processes, whereas downstream sites also show a control of benthic oxygen demand in addition to the aforementioned processes. Using empirical modeling, we analyze the sensitivity of our estimated metabolism rates to multiple environmental stressors. Results demonstrate that empirical models could be useful for rapid river health assessments, but need improvements to reproduce peak metabolism rates. The process-based model, although more complex than existing in situ approaches to metabolism quantification, allows inference when gaps in continuous observations are present. The model offers additional benefits for predicting metabolism rates under future scenarios of environmental change incorporating multiple stressor effects.
